PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S04037.10
Common NameJCGZ_04192, LOC105632398
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 119aa    MW: 13637 Da    PI: 4.8512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S04037.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-09752346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +W+  Ed+l+ +a   ++ +   +W +Ia+ ++ gRt  ++k ++ +
    Jcr4S04037.10  7 SWSRLEDKLFERALVIFPEEspnRWQKIAAQVP-GRTWVEVKKHYED 52
                     7*****************99*************.***********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.124158IPR017930Myb domain
SMARTSM007171.5E-10456IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-12660IPR009057Homeodomain-like
PfamPF002498.4E-8753IPR001005SANT/Myb domain
CDDcd001672.23E-7754No hitNo description
Gene3DG3DSA:1.10.10.604.1E-7753IPR009057Homeodomain-like
PROSITE profilePS512947.923105119IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MIGNSSSWSR LEDKLFERAL VIFPEESPNR WQKIAAQVPG RTWVEVKKHY EDLVHDVGEI  60
DSGRVQLPSY EDEWGMDSAG GWGSVTESGT SQVWFGSKGK EKETSERRKG VPWTEEEHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-18375678RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070162.13e-82PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A067KUN74e-82A0A067KUN7_JATCU; Uncharacterized protein
STRINGGLYMA10G42450.11e-39(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60683251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-30MYB family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]